Mykonos Hotel Guide - Boutique Hotels in Mykonos, South Aegean

Start date: Check-in selected.
To Date
End date: Check-out

  • Change your mind

    Book hotels with free cancellation

  • Treat yourself

    Sign in to save 10% or more on thousands of hotels
    Sign in

  • Be picky

    Search almost a million properties worldwide

Check availability on Mykonos Boutique Hotels

Tonight
30 Dec - 31 Dec
Tomorrow
31 Dec - 1 Jan
This weekend
2 Jan - 4 Jan
Next weekend
9 Jan - 11 Jan
No exact matches found, but these alternatives could be just right

Recommended hotels in Mykonos

Suite (Polymneia) | Terrace/patio
Mykonos Moussa Suites

Mykonos Moussa Suites

Mykonos Moussa Suites
Mykonos
9.8 out of 10, Exceptional, (94)
"Great hospitality. Great sea view. Close to nice beaches. "
United States
Osman
The price is €124
includes taxes & fees
23 Jan - 24 Jan 2026
Mykonos Moussa Suites
Food and drink
Oniro Suites

Oniro Suites

Oniro Suites
Mykonos
9.4 out of 10, Exceptional, (101)
"Property is conveniently located near Mykonos Town"
Canada
Marc
The price is €122
includes taxes & fees
2 Jan - 3 Jan 2026
Oniro Suites
Basic Double Room
Eternal Town

Eternal Town

Eternal Town
Mykonos
9.4 out of 10, Exceptional, (35)
"Very nice and clean studio - would stay again!"
United States
Christopher
The price is €46
includes taxes & fees
31 Dec - 1 Jan 2026
Eternal Town
Superior Suite, Private Pool, Sea View (Amalthia) | Terrace/patio
Amallini Suites Mykonos

Amallini Suites Mykonos

Amallini Suites Mykonos
Mykonos
10.0 out of 10, Exceptional, (10)
"Amazing"
United States
Yazael
The price is €220
includes taxes & fees
4 Jan - 5 Jan 2026
Amallini Suites Mykonos
Exterior
Niriides Homes & Villas

Niriides Homes & Villas

Niriides Homes & Villas
Mykonos
9.6 out of 10, Exceptional, (141)
"Amazing accommodation Great location if you have car Can be noisy if too windy"
Australia
Michael
The price is €60
includes taxes & fees
31 Dec - 1 Jan 2026
Niriides Homes & Villas
Exterior
Seacode Villas

Seacode Villas

Seacode Villas
Mykonos
10.0 out of 10, Exceptional, (17)
"Beautiful property with amazing views, private pool, hot tub, onsite parking and walkable to beach. This was an amazing 3 bedroom property with amazing views of the sea and beach. Pool, outdoor kitchen and hot tub were very nice. "
United States
Perianan
The price is €108
includes taxes & fees
15 Jan - 16 Jan 2026
Seacode Villas
Grand Triple Room
VE ZO Suites Mykonos

VE ZO Suites Mykonos

VE ZO Suites Mykonos
4.0 star property
Mykonos
10.0 out of 10, Exceptional, (13)
"The hotel was great and very spacious. The pool was beautiful, the property was family-friendly, and the location was excellent. I would definitely recommend it. Newport is also within walking distance. The host was extremely helpful, and I truly appreciated the hospitality."
United States
Rikin
The price is €74
includes taxes & fees
5 Jan - 6 Jan 2026
VE ZO Suites Mykonos
Standard Suite
Eternal Suites

Eternal Suites

Eternal Suites
Mykonos
9.0 out of 10, Wonderful, (129)
"Very clean, very courteous host."
Canada
Kevin
The price is €59
includes taxes & fees
31 Dec - 1 Jan 2026
Eternal Suites
Property grounds
Alessios Mykonian Downtown Houses

Alessios Mykonian Downtown Houses

Alessios Mykonian Downtown Houses
Mykonos
8.6 out of 10, Excellent, (10)
"Nice walking distance everything "
United States
Hector
The price is €60
includes taxes & fees
20 Jan - 21 Jan 2026
Alessios Mykonian Downtown Houses
Standard Studio | Mountain view
Mykonian Breeze

Mykonian Breeze

Mykonian Breeze
Mykonos
10.0 out of 10, Exceptional, (3)
"The facilities and accommodation were great! Joanna, the host, was very helpful and friendly. I highly recommend if you are staying in the Ano Mera area. "
United Kingdom
Anonymous traveller
The price is €76
includes taxes & fees
31 Dec - 1 Jan 2026
Mykonian Breeze
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
View all properties

Top Mykonos Hotel Reviews

Harmony Boutique Hotel

Harmony Boutique Hotel

10/10 Excellent
"Went late November, great hotel but the town is very quiet at this time of the year "
Marc 3-night trip
Posted 1 month ago
Harmony Boutique Hotel

Frequently asked questions

Searching for a unique accommodation option for your visit to Mykonos?
If you want to find a small hotel with outstanding service, a personal feel, and good ambiance, a boutique hotel may be exactly what you want. Select from 16 boutique accommodation options in Mykonos to find a property that represents the local spirit of this area.
What's the best boutique accommodation in Mykonos?
Nissaki Boutique Hotel is a favourite hotel with our travellers looking for stylish accommodation, and features 44 guestrooms, a private beach and a poolside restaurant. Axel Beach Mykonos - Adults Only and Boheme Mykonos Town - Small Luxury Hotels of the World are two other options for a boutique stay.
How many boutique hotels will I find in Mykonos?
Expedia has 16 boutique hotels in Mykonos.
What's there to see and do in Mykonos?
Visitors speak positively about this destination's breathtaking beach views, fantastic nightlife and beautiful island views. Matoyianni Street, Aegean Maritime Museum and Mykonos Town Hall are some of the local sights worth visiting. You might also want to consider exploring Church of Panagia Paraportiani, Fabrica Square and Mykonos Old Port while you're here.
What kind of weather should I plan for when I travel to Mykonos?
Understanding the weather in Mykonos is important when planning your trip. The hottest months are usually August and July, with an average temperature of 24°C, while the coldest months are January and February, with an average of 13°C. Average annual precipitation for Mykonos is 384 mm.
What's the best way to get to my boutique hotel in Mykonos?
You have a few options for travelling to and around Mykonos. The nearest major airport is Mykonos (JMK-Mykonos Island National), which is located 1.3 mi (2 km) from the heart of the city, but Ermoupolis (JSY-Syros Island National) may also be an option. If you'd like to explore around the area, you may want to rent a car for your trip.

Explore a world of travel with Expedia