Cheap Flights from Heraklion to Santorini

View €58 flight on Sun, 12 Oct 2025Opens in a new window

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Cheap flights from Heraklion to Santorini (HER-JTR)

Prices were available within the past 7 days and start at €58 for one-way flights and €165 for round trip, for the period specified. Prices and availability are subject to change. Additional terms apply.

Aegean
Thu, 18 Sep - Mon, 22 Sep
HER
Heraklion
JTR
Santorini
€165 Return, found 3 days ago
€165
Return
found 3 days ago
Select Aegean flight, departing Thu, 18 Sep from Heraklion to Santorini, returning Mon, 22 Sep, priced at €165 found 3 days ago
SKY express
Thu, 18 Sep - Mon, 22 Sep
HER
Heraklion
JTR
Santorini
€181 Return, found 3 days ago
€181
Return
found 3 days ago
Select SKY express flight, departing Thu, 18 Sep from Heraklion to Santorini, returning Mon, 22 Sep, priced at €181 found 3 days ago
Aegean
Sat, 20 Sep - Sun, 21 Sep
HER
Heraklion
JTR
Santorini
€182 Return, found 2 days ago
€182
Return
found 2 days ago
Select Aegean flight, departing Sat, 20 Sep from Heraklion to Santorini, returning Sun, 21 Sep, priced at €182 found 2 days ago
Aegean
Sat, 20 Sep - Sun, 21 Sep
HER
Heraklion
JTR
Santorini
€198 Return, found 2 days ago
€198
Return
found 2 days ago
Select Aegean flight, departing Sat, 20 Sep from Heraklion to Santorini, returning Sun, 21 Sep, priced at €198 found 2 days ago
Aegean
Sat, 20 Sep - Sun, 21 Sep
HER
Heraklion
JTR
Santorini
€199 Return, found 2 days ago
€199
Return
found 2 days ago
Select Aegean flight, departing Sat, 20 Sep from Heraklion to Santorini, returning Sun, 21 Sep, priced at €199 found 2 days ago
Aegean
Thu, 18 Sep - Mon, 22 Sep
HER
Heraklion
JTR
Santorini
€202 Return, found 3 days ago
€202
Return
found 3 days ago
Select Aegean flight, departing Thu, 18 Sep from Heraklion to Santorini, returning Mon, 22 Sep, priced at €202 found 3 days ago

Find the cheapest month to fly from Heraklion (HER) to Santorini (JTR)

May is typically the cheapest month to fly

From €99 - €185 per traveller.

Graph displaying average flight prices per month

*Available to Expedia members.