San Diego Hotel Guide - Mission Bay hotels in San Diego, United States of America.

  • Plan, book, stay with confidence

  • bex rewards loyalty icon
    Be picky
    Search almost a million properties worldwide
    payments icon
    Treat yourself
    Sign in to save 10% or more on thousands of hotels
    today icon
    Change your mind
    Book hotels with free cancellation

Check prices for these dates

This weekend
Next weekend

Filter by

Guest rating
Guest rating
Property class

Top Trending Hotels Near Mission Bay

The Dana on Mission Bay

3.5 star property
8.8 out of 10, Excellent, (3308)
"Easy to get to all attractions and wonderful staff. I like to thank them for switching us to a bigger suite because they working on the one upstairs."
The price is €174
includes taxes & fees
20 Apr - 21 Apr
The Dana on Mission Bay

Paradise Point Resort & Spa

4.0 star property
8.6 out of 10, Excellent, (2127)
"Perfect location"
The price is €264
includes taxes & fees
21 Apr - 22 Apr
Paradise Point Resort & Spa

The Boardwalk Hotel

3.0 star property
9.2 out of 10, Wonderful, (137)
"Loved the location. One of the best hotels I have stayed in the area. Well priced and they had great recommendations on local restaurants and even give promos. The only critiques I had was there was hair still all over the bed. The mirror had water spots. The toilet had some stuff around the top of the bowl. Just felt like they might not of cleaned it very well. The side door was hard to open in our room. I would give them another shot and the decorations had a great vibe. "
The price is €197
includes taxes & fees
21 Apr - 22 Apr
The Boardwalk Hotel

ITH Mission Beach Backpacker Hostel

2.0 star property
9.2 out of 10, Wonderful, (152)
"What a great place to stay close to the beach and zbelmont Park!"
The price is €121
includes taxes & fees
8 Apr - 9 Apr
ITH Mission Beach Backpacker Hostel

Hyatt Regency Mission Bay Spa and Marina

4.0 star property
8.6 out of 10, Excellent, (1462)
"Was great, staff was awesome too! I’ll be back"
The price is €214
includes taxes & fees
28 Apr - 29 Apr
Hyatt Regency Mission Bay Spa and Marina

The Wayfarer San Diego

4.0 star property
9.2 out of 10, Wonderful, (1376)
"Location was close to restaurant and beaches "
The price is €238
includes taxes & fees
28 Apr - 29 Apr
The Wayfarer San Diego

The Beach Cottages

2.5 star property
9.2 out of 10, Wonderful, (1004)
"Firepit closes too early"
The price is €129
includes taxes & fees
15 Apr - 16 Apr
The Beach Cottages

Bahia Resort Hotel

3.5 star property
8.6 out of 10, Excellent, (1506)
"I absolutely love the Bahia!!! Every year we go to San Diego we stay there. Super close to walk to everything wether it's the quiet bay side or mission beach. Luigi's is a staple which is also a quick walk. Each year we stay in a different type of room... I recommend the garden side you won't be disappointed."
The price is €248
includes taxes & fees
13 Apr - 14 Apr
Bahia Resort Hotel

Holiday Inn Express San Diego - SeaWorld Area by IHG

2.5 star property
8.8 out of 10, Excellent, (1014)
"Nice stay, very clean, breakfast is very good, customer laundry is convenient. "
The price is €152
includes taxes & fees
13 Apr - 14 Apr
Holiday Inn Express San Diego - SeaWorld Area by IHG

Fairfield Inn & Suites by Marriott San Diego Pacific Beach

2.5 star property
8.8 out of 10, Excellent, (684)
"Everything "
The price is €138
includes taxes & fees
20 Apr - 21 Apr
Fairfield Inn & Suites by Marriott San Diego Pacific Beach

San Diego Mission Bay Resort

4.0 star property
8.2 out of 10, Very good, (1162)
"The room assigned to us is right next to the elevator and ice machine, which is really noisy sometimes, hopefully this can be improved in future. But the location is great "
The price is €236
includes taxes & fees
20 Apr - 21 Apr
San Diego Mission Bay Resort

Comfort Inn Sea World Area

3.5 star property
8.4 out of 10, Very good, (1899)
"Excellent hot breakfast! Conveniently located by Sea World, San Diego Zoo and San Diego Animal Safari Park."
The price is €111
includes taxes & fees
20 Apr - 21 Apr
Comfort Inn Sea World Area

GreenTree Inn San Diego Mission Bay

2.5 star property
8.0 out of 10, Very good, (1343)
"Easy check in with no problems "
The price is €99
includes taxes & fees
20 Apr - 21 Apr
GreenTree Inn San Diego Mission Bay

Catamaran Resort and Spa

4.0 star property
8.2 out of 10, Very good, (1017)
"Great location and fantastic on-site beach area in Mission Bay. Pool wasn't well maintained and understaffed, but when you're across the street from a great beach, why are you at the pool? Restaurants were super pricey, so I recommend walking to one of the several restaurants close by for breakfast, lunch, or dinner."
The price is €246
includes taxes & fees
13 Apr - 14 Apr
Catamaran Resort and Spa

SureStay Hotel by Best Western San Diego Pacific Beach

2.5 star property
8.0 out of 10, Very good, (1016)
"The restroom wasnt clean but overall good location & excellent price"
The price is €105
includes taxes & fees
8 Apr - 9 Apr
SureStay Hotel by Best Western San Diego Pacific Beach

Surfer Beach Hotel

3.0 star property
8.0 out of 10, Very good, (1012)
"Beautiful view from the fourth floor."
The price is €161
includes taxes & fees
20 Apr - 21 Apr
Surfer Beach Hotel

Wyndham Garden San Diego Near SeaWorld

3.0 star property
7.2 out of 10, Good, (3849)
"Front desk was amazing checking in only thing that could need improvement is the beds"
The price is €107
includes taxes & fees
20 Apr - 21 Apr
Wyndham Garden San Diego Near SeaWorld

Mission Bay Inn San Diego

2.5 star property
7.2 out of 10, Good, (1194)
"Hotel was going through major renovation but room was nice with some needed touchups. "
The price is €96
includes taxes & fees
14 Apr - 15 Apr
Mission Bay Inn San Diego

ITH Beach Bungalow Surf Hostel

2.0 star property
7.8 out of 10, Good, (223)
"This is a hostel, so if you want 4 stars go somewhere else. The property could use quite a bit of TLC, but the linens and rooms were clean. The staff were awesome and the overall vibe of the hostel was exactly what I hoped and more. The staff do fun nights and simple meals. Overall I really enjoyed my stay. "
The price is €123
includes taxes & fees
20 Apr - 21 Apr
ITH Beach Bungalow Surf Hostel

Heritage Inn San Diego

2.0 star property
6.4 out of 10, (1010)
"They need to change the beds and the carpets, otherwise everything was great "
The price is €74
includes taxes & fees
20 Apr - 21 Apr
Heritage Inn San Diego
Lowest nightly price found within the past 24 hours based on a 1 night stay for 2 adults. Prices and availability subject to change. Additional terms may apply.
Don't see what you're looking for?
See all available properties in Mission Bay
Save an average of 15% on thousands of hotels when you're signed in

Frequently asked questions

What's the area like around Mission Bay?

Mission Bay is located in a family-friendly area of San Diego known for its array of dining options and popular zoo. If you're looking for a convenient place to stay, take a look at the 71 hotels and other accommodation options you'll find within a mile.

What's the best place to stay near Mission Bay?

San Diego Mission Bay Resort is one of the top choices for your stay based on our traveller data, and this hotel offers a full-service spa and 2 restaurants. It's located just a short 1 mi (1.6 km) from Mission Bay. Another good option is Paradise Point Resort & Spa, located just 0.7 mi (1.2 km) away.

How many hotels will I find near Mission Bay?

Expedia has 71 hotels and other accommodation options within a mile from Mission Bay.

If I need to cancel the hotel reservation for my stay near Mission Bay, will I receive a refund?

Yes! You'll find that most room reservations are fully refundable if cancelled prior to the hotel's cancellation deadline, which is usually within 24-48 hours of the scheduled arrival. If you booked a non-refundable reservation, you might still have the option to cancel and get a refund within 24 hours of booking. Enter your dates, click on "Search", then you can filter by "fully refundable" to view the best deals near Mission Bay.

What can I see and do near Mission Bay?

Study the collections at Maritime Museum of San Diego, Whaley House Museum or Junipero Serra Museum. Casa de Machado y Stewart, McCoy Museum House and Casa de Estudillo are well-known local landmarks worth a visit. You can catch a show at Humphreys Concerts by the Bay, Cygnet Theater Company and Red Spade Theater.